HL_4V5B_125

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V5B|1|CB|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_125 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.3848

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

4V5B|1|CB|U|826
4V5B|1|CB|U|827
4V5B|1|CB|U|828
4V5B|1|CB|A|829
4V5B|1|CB|G|830
4V5B|1|CB|G|831

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CL

50S RIBOSOMAL PROTEIN L15