HL_4V5B_129

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V5B|1|CB|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_129 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3017

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|C|1064
4V5B|1|CB|U|1065
4V5B|1|CB|U|1066
4V5B|1|CB|A|1067
4V5B|1|CB|G|1068
4V5B|1|CB|A|1069
4V5B|1|CB|A|1070
4V5B|1|CB|G|1071
4V5B|1|CB|C|1072
4V5B|1|CB|A|1073
4V5B|1|CB|G|1074

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CI

50S RIBOSOMAL PROTEIN L11