HL_4V5B_136

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V5B|1|CB|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_136 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1899

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|G|1389
4V5B|1|CB|U|1390
4V5B|1|CB|U|1391
4V5B|1|CB|A|1392
4V5B|1|CB|A|1393
4V5B|1|CB|U|1394
4V5B|1|CB|A|1395
4V5B|1|CB|U|1396
4V5B|1|CB|U|1397
4V5B|1|CB|C|1398

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CT

50S RIBOSOMAL PROTEIN L23