3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
4V5B|1|CB|A|1614, 4V5B|1|CB|A|1616, 4V5B|1|CB|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5B_141 not in the Motif Atlas
Homologous match to HL_4WF9_038
Geometric discrepancy: 0.2904
The information below is about HL_4WF9_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

4V5B|1|CB|C|1612
4V5B|1|CB|G|1613
4V5B|1|CB|A|1614
4V5B|1|CB|C|1615
4V5B|1|CB|A|1616
4V5B|1|CB|C|1617
4V5B|1|CB|A|1618
4V5B|1|CB|G|1619

Current chains

Chain CB
23S RIBOSOMAL RNA

Nearby chains

Chain C2
50S RIBOSOMAL PROTEIN L34
Chain CS
50S RIBOSOMAL PROTEIN L22

Coloring options:


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