HL_4V5B_149

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGGUAAGUUCC

Length

11 nucleotides

Bulged bases

4V5B|1|CB|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|G|1948
4V5B|1|CB|G|1949
4V5B|1|CB|G|1950
4V5B|1|CB|U|1951
4V5B|1|CB|A|1952
4V5B|1|CB|A|1953
4V5B|1|CB|G|1954
4V5B|1|CB|U|1955
4V5B|1|CB|U|1956
4V5B|1|CB|C|1957
4V5B|1|CB|C|1958

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CK

50S RIBOSOMAL PROTEIN L14

Chain DA

Small subunit ribosomal RNA; SSU rRNA