HL_4V5B_151

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GACGCCAGUC

Length

10 nucleotides

Bulged bases

4V5B|1|CB|C|2145, 4V5B|1|CB|C|2146, 4V5B|1|CB|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_151 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3994

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V5B|1|CB|G|2141
4V5B|1|CB|A|2142
4V5B|1|CB|C|2143
4V5B|1|CB|G|2144
4V5B|1|CB|C|2145
4V5B|1|CB|C|2146
4V5B|1|CB|A|2147
4V5B|1|CB|G|2148
4V5B|1|CB|U|2149
4V5B|1|CB|C|2150

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains