HL_4V5B_155

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_155 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.3544

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|G|2303
4V5B|1|CB|G|2304
4V5B|1|CB|U|2305
4V5B|1|CB|C|2306
4V5B|1|CB|G|2307
4V5B|1|CB|G|2308
4V5B|1|CB|A|2309
4V5B|1|CB|C|2310
4V5B|1|CB|A|2311
4V5B|1|CB|U|2312
4V5B|1|CB|C|2313

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

5S ribosomal RNA; 5S rRNA

Chain CF

50S RIBOSOMAL PROTEIN L5