HL_4V5B_160

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_160 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1805

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5B|1|CB|A|2471
4V5B|1|CB|G|2472
4V5B|1|CB|U|2473
4V5B|1|CB|U|2474
4V5B|1|CB|C|2475
4V5B|1|CB|A|2476
4V5B|1|CB|U|2477
4V5B|1|CB|A|2478
4V5B|1|CB|U|2479

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C4

50S RIBOSOMAL PROTEIN L36

Chain CG

50S RIBOSOMAL PROTEIN L6