HL_4V5B_168

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4V5B|1|CB|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_168 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1852

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5B|1|CB|G|2819
4V5B|1|CB|A|2820
4V5B|1|CB|A|2821
4V5B|1|CB|G|2822
4V5B|1|CB|A|2823
4V5B|1|CB|C|2824
4V5B|1|CB|G|2825
4V5B|1|CB|A|2826
4V5B|1|CB|C|2827

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CD

50S RIBOSOMAL PROTEIN L3

Chain CN

50S RIBOSOMAL PROTEIN L17