HL_4V5B_177

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_177 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2025

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5B|1|DA|A|320
4V5B|1|DA|A|321
4V5B|1|DA|C|322
4V5B|1|DA|U|323
4V5B|1|DA|G|324
4V5B|1|DA|A|325
4V5B|1|DA|G|326
4V5B|1|DA|A|327
4V5B|1|DA|C|328
4V5B|1|DA|A|329
4V5B|1|DA|C|330
4V5B|1|DA|G|331
4V5B|1|DA|G|332
4V5B|1|DA|U|333

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DP

30S RIBOSOMAL PROTEIN S16

Chain DT

30S RIBOSOMAL PROTEIN S20