HL_4V5B_194

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

4V5B|1|DA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_194 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.5438

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V5B|1|DA|U|1165
4V5B|1|DA|G|1166
4V5B|1|DA|A|1167
4V5B|1|DA|U|1168
4V5B|1|DA|A|1169
4V5B|1|DA|A|1170
4V5B|1|DA|A|1171

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DB

30S RIBOSOMAL PROTEIN S2

Chain DG

30S RIBOSOMAL PROTEIN S7