HL_4V5B_203

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAUACAGGGUGACAG

Length

16 nucleotides

Bulged bases

4V5B|1|AB|U|321, 4V5B|1|AB|A|322, 4V5B|1|AB|C|323, 4V5B|1|AB|G|329, 4V5B|1|AB|A|330, 4V5B|1|AB|C|331, 4V5B|1|AB|A|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_203 not in the Motif Atlas

Homologous match to HL_4WF9_011

Geometric discrepancy: 0.4963

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V5B|1|AB|C|318
4V5B|1|AB|G|319
4V5B|1|AB|A|320
4V5B|1|AB|U|321
4V5B|1|AB|A|322
4V5B|1|AB|C|323
4V5B|1|AB|A|324
4V5B|1|AB|G|325
4V5B|1|AB|G|326
4V5B|1|AB|G|327
4V5B|1|AB|U|328
4V5B|1|AB|G|329
4V5B|1|AB|A|330
4V5B|1|AB|C|331
4V5B|1|AB|A|332
4V5B|1|AB|G|333

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AE

50S RIBOSOMAL PROTEIN L4

Chain AU

50S RIBOSOMAL PROTEIN L24