HL_4V5B_226

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

4V5B|1|CB|U|1729, 4V5B|1|CB|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_226 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.5121

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5B|1|CB|C|1727
4V5B|1|CB|C|1728
4V5B|1|CB|U|1729
4V5B|1|CB|C|1730
4V5B|1|CB|G|1731
4V5B|1|CB|C|1732
4V5B|1|CB|G|1733

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains