HL_4V5B_236

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAGUAAAGUUAAUACCUUUGCUCAU

Length

26 nucleotides

Bulged bases

4V5B|1|DA|A|461, 4V5B|1|DA|A|466, 4V5B|1|DA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|454
4V5B|1|DA|G|455
4V5B|1|DA|A|456
4V5B|1|DA|G|457
4V5B|1|DA|U|458
4V5B|1|DA|A|459
4V5B|1|DA|A|460
4V5B|1|DA|A|461
4V5B|1|DA|G|462
4V5B|1|DA|U|463
4V5B|1|DA|U|464
4V5B|1|DA|A|465
4V5B|1|DA|A|466
4V5B|1|DA|U|467
4V5B|1|DA|A|468
4V5B|1|DA|C|469
4V5B|1|DA|C|470
4V5B|1|DA|U|471
4V5B|1|DA|U|472
4V5B|1|DA|U|473
4V5B|1|DA|G|474
4V5B|1|DA|C|475
4V5B|1|DA|U|476
4V5B|1|DA|C|477
4V5B|1|DA|A|478
4V5B|1|DA|U|479

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DP

30S RIBOSOMAL PROTEIN S16