HL_4V5B_238

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGUGUAGCGGUGAAAUGCGUAGAGAUC

Length

27 nucleotides

Bulged bases

4V5B|1|DA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|682
4V5B|1|DA|G|683
4V5B|1|DA|U|684
4V5B|1|DA|G|685
4V5B|1|DA|U|686
4V5B|1|DA|A|687
4V5B|1|DA|G|688
4V5B|1|DA|C|689
4V5B|1|DA|G|690
4V5B|1|DA|G|691
4V5B|1|DA|U|692
4V5B|1|DA|G|693
4V5B|1|DA|A|694
4V5B|1|DA|A|695
4V5B|1|DA|A|696
4V5B|1|DA|U|697
4V5B|1|DA|G|698
4V5B|1|DA|C|699
4V5B|1|DA|G|700
4V5B|1|DA|U|701
4V5B|1|DA|A|702
4V5B|1|DA|G|703
4V5B|1|DA|A|704
4V5B|1|DA|G|705
4V5B|1|DA|A|706
4V5B|1|DA|U|707
4V5B|1|DA|C|708

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain CB

Large subunit ribosomal RNA; LSU rRNA

Chain DG

30S RIBOSOMAL PROTEIN S7

Chain DK

30S RIBOSOMAL PROTEIN S11

Chain DU

30S RIBOSOMAL PROTEIN S21