HL_4V5B_239

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_239 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3406

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V5B|1|DA|G|725
4V5B|1|DA|C|726
4V5B|1|DA|G|727
4V5B|1|DA|A|728
4V5B|1|DA|A|729
4V5B|1|DA|G|730
4V5B|1|DA|G|731
4V5B|1|DA|C|732

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DO

30S RIBOSOMAL PROTEIN S15

Chain DR

30S RIBOSOMAL PROTEIN S18

Chain DU

30S RIBOSOMAL PROTEIN S21