HL_4V5B_241

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAGUACGGCCGCAAGGUUAAAAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|887
4V5B|1|DA|G|888
4V5B|1|DA|A|889
4V5B|1|DA|G|890
4V5B|1|DA|U|891
4V5B|1|DA|A|892
4V5B|1|DA|C|893
4V5B|1|DA|G|894
4V5B|1|DA|G|895
4V5B|1|DA|C|896
4V5B|1|DA|C|897
4V5B|1|DA|G|898
4V5B|1|DA|C|899
4V5B|1|DA|A|900
4V5B|1|DA|A|901
4V5B|1|DA|G|902
4V5B|1|DA|G|903
4V5B|1|DA|U|904
4V5B|1|DA|U|905
4V5B|1|DA|A|906
4V5B|1|DA|A|907
4V5B|1|DA|A|908
4V5B|1|DA|A|909
4V5B|1|DA|C|910

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain CB

Large subunit ribosomal RNA; LSU rRNA

Chain DL

30S RIBOSOMAL PROTEIN S12