HL_4V5C_042

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

4V5C|1|BA|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_042 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.1157

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5C|1|BA|G|123
4V5C|1|BA|G|124
4V5C|1|BA|G|125
4V5C|1|BA|A|126
4V5C|1|BA|A|127
4V5C|1|BA|C|128

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BX

50S RIBOSOMAL PROTEIN L23