Motif HL_82710.4 Version HL_82710.4 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9PN5_050 | 9PN5 | 0.9218 | 5 | A1 | LSU rRNA | A | 2535 | A | 2536 | U | 2538 | U | 2543 | U | 2544 | cWW |
| 2 | HL_8B0X_035 | 8B0X | 0.1180 | 1 | a | LSU rRNA | G | 123 | G | 124 | A | 126 | A | 127 | C | 128 | cWW |
| 3 | HL_9DFE_003 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | G | 123 | G | 124 | A | 126 | A | 127 | C | 128 | cWW |
| 4 | HL_7A0S_003 | 7A0S | 0.1504 | 1 | X | LSU rRNA | G | 121 | G | 122 | A | 124 | A | 125 | C | 126 | cWW |
| 5 | HL_1U63_002 | 1U63 | 0.6468 | 1 | D | 49 NT FRAGMENT OF MRNA FOR L1 | G | 20 | A | 22 | C | 23 | U | 24 | C | 25 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAC | 2 |
| AAUUCAUUUU | 1 |
| GGGAAC | 1 |
| GAACUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| AUUCAUUU | 1 |
| GGAA | 1 |
| AACU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.50 | Max 0.97
Coloring options: