3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGUGAGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5C_061 not in the Motif Atlas
Homologous match to HL_7RQB_022
Geometric discrepancy: 0.0864
The information below is about HL_7RQB_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84085.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
15

Unit IDs

4V5C|1|BA|G|712
4V5C|1|BA|G|713
4V5C|1|BA|U|714
4V5C|1|BA|G|715
4V5C|1|BA|A|716
4V5C|1|BA|G|717
4V5C|1|BA|A|718
4V5C|1|BA|C|719

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AO
30S RIBOSOMAL PROTEIN S15
Chain AQ
30S RIBOSOMAL PROTEIN S17
Chain BD
50S RIBOSOMAL PROTEIN L2

Coloring options:


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