HL_4V5C_065

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_065 not in the Motif Atlas

Homologous match to HL_9DFE_024

Geometric discrepancy: 0.5312

The information below is about HL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5C|1|BA|C|884
4V5C|1|BA|C|885
4V5C|1|BA|C|886
4V5C|1|BA|A|887
4V5C|1|BA|C|888
4V5C|1|BA|C|889
4V5C|1|BA|A|890
4V5C|1|BA|G|892

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AS

30S RIBOSOMAL PROTEIN S19