HL_4V5C_087
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4V5C|1|BA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_087 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1268
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V5C|1|BA|G|1910
4V5C|1|BA|U|1911
4V5C|1|BA|A|1912
4V5C|1|BA|A|1913
4V5C|1|BA|C|1914
4V5C|1|BA|U|1915
4V5C|1|BA|A|1916
4V5C|1|BA|U|1917
4V5C|1|BA|A|1918
4V5C|1|BA|A|1919
4V5C|1|BA|C|1920
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AV
- Transfer RNA; tRNA
- Chain AX
- MRNA
- Chain AY
- Transfer RNA; tRNA
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