HL_4V5C_116

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4V5C|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_116 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0866

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5C|1|CA|G|259
4V5C|1|CA|G|260
4V5C|1|CA|U|261
4V5C|1|CA|A|262
4V5C|1|CA|A|263
4V5C|1|CA|U|264
4V5C|1|CA|G|265
4V5C|1|CA|G|266
4V5C|1|CA|C|267

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CQ

30S RIBOSOMAL PROTEIN S17

Chain CT

30S RIBOSOMAL PROTEIN S20