HL_4V5C_136

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_136 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2745

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5C|1|CA|G|1164
4V5C|1|CA|C|1165
4V5C|1|CA|G|1166
4V5C|1|CA|A|1168
4V5C|1|CA|A|1169
4V5C|1|CA|A|1170
4V5C|1|CA|G|1171
4V5C|1|CA|C|1172

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CG

30S RIBOSOMAL PROTEIN S7