HL_4V5C_142
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4V5C|1|CV|C|16, 4V5C|1|CV|C|17, 4V5C|1|CV|U|17|||A, 4V5C|1|CV|G|18, 4V5C|1|CV|G|19, 4V5C|1|CV|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_142 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.1843
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V5C|1|CV|C|13
4V5C|1|CV|A|14
4V5C|1|CV|G|15
4V5C|1|CV|C|16
4V5C|1|CV|C|17
4V5C|1|CV|U|17|||A
4V5C|1|CV|G|18
4V5C|1|CV|G|19
4V5C|1|CV|U|20
4V5C|1|CV|A|21
4V5C|1|CV|G|22
Current chains
- Chain CV
- P-SITE TRNA FMET
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
Coloring options: