HL_4V5C_144
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- G(5MU)UCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V5C|1|CV|U|55
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_144 not in the Motif Atlas
- Homologous match to HL_5HR7_006
- Geometric discrepancy: 0.0882
- The information below is about HL_5HR7_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4V5C|1|CV|G|53
4V5C|1|CV|5MU|54
4V5C|1|CV|U|55
4V5C|1|CV|C|56
4V5C|1|CV|A|57
4V5C|1|CV|A|58
4V5C|1|CV|A|59
4V5C|1|CV|U|60
4V5C|1|CV|C|61
Current chains
- Chain CV
- P-SITE TRNA FMET
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: