HL_4V5C_145

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V5C|1|CW|C|17, 4V5C|1|CW|G|19, 4V5C|1|CW|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_145 not in the Motif Atlas

Homologous match to HL_4WT8_135

Geometric discrepancy: 0.4346

The information below is about HL_4WT8_135

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.3

Basepair signature

cWW-cWS-F

Number of instances in this motif group

16

Unit IDs

4V5C|1|CW|C|13
4V5C|1|CW|A|14
4V5C|1|CW|G|15
4V5C|1|CW|U|16
4V5C|1|CW|C|17
4V5C|1|CW|G|18
4V5C|1|CW|G|19
4V5C|1|CW|U|20
4V5C|1|CW|A|21
4V5C|1|CW|G|22

Current chains

Chain CW

E-SITE TRNA PHE

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA