HL_4V5C_149
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_149 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.2673
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V5C|1|CY|G|30
4V5C|1|CY|A|31
4V5C|1|CY|U|32
4V5C|1|CY|U|33
4V5C|1|CY|G|34
4V5C|1|CY|A|35
4V5C|1|CY|A|36
4V5C|1|CY|A|37
4V5C|1|CY|A|38
4V5C|1|CY|U|39
4V5C|1|CY|C|40
Current chains
- Chain CY
- A-SITE PHE-TRNA PHE
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CX
- MRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: