HL_4V5C_154

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_154 not in the Motif Atlas

Homologous match to HL_7RQB_004

Geometric discrepancy: 0.327

The information below is about HL_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79921.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

15

Unit IDs

4V5C|1|DA|G|139
4V5C|1|DA|G|139|||A
4V5C|1|DA|G|140
4V5C|1|DA|A|141
4V5C|1|DA|A|142
4V5C|1|DA|C|142|||A

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D2

50S RIBOSOMAL PROTEIN L29

Chain DX

50S RIBOSOMAL PROTEIN L23