RNA 3D Hub //

Motif HL_79921.3 Version HL_79921.3 of this group appears in releases 3.83 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 51-52-32-4
1 HL_7RQB_0047RQB0.631111AG139G140A141A142C142|||AcWW
2 HL_3IVK_0033IVK0.09442Fab BL3-6 binding hairpin with tSWMG59A61C63A64C65cWWtSW
3 HL_6DB9_0016DB90.07482Fab BL3-6 binding hairpin with tSWRG23A25C27A28C29cWWtSW
4 HL_4KZD_0014KZD0.08552Fab BL3-6 binding hairpin with tSWRG37A39C41A42C43cWWtSW
5 HL_8D29_0038D290.07562Fab BL3-6 binding hairpin with tSWJG13A15C17A18C19cWWtSW
6 HL_8D29_0028D290.06342Fab BL3-6 binding hairpin with tSWFG13A15C17A18C19cWWtSW
7 HL_8DK7_0018DK70.00002Fab BL3-6 binding hairpin with tSWCG13A15C17A18C19cWWtSW
8 HL_8D29_0018D290.09812Fab BL3-6 binding hairpin with tSWCG13A15C17A18C19cWWtSW
9 HL_6X5M_0026X5M0.12562Fab BL3-6 binding hairpin with tSWrG14A16C18A19C20cWWtSW
10 HL_7SZU_0017SZU0.12752Fab BL3-6 binding hairpin with tSWRG35A37C39A40C41cWWtSW
11 HL_8UIW_0018UIW0.11712Fab BL3-6 binding hairpin with tSWNG29A31C33A34C35cWWtSW
12 HL_7MLX_0027MLX0.13332Fab BL3-6 binding hairpin with tSWRG40A42C44A45C46cWWtSW
13 HL_8DP3_0018DP30.13082Fab BL3-6 binding hairpin with tSWRG20A22C24A25C26cWWtSW
14 HL_8T29_0018T290.13802Fab BL3-6 binding hairpin with tSWRG35A37C39A40C41cWWtSW
15 HL_6OL3_0016OL30.50282Other HLCG64A66C68C69C70cWWntSW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC13
GGGAAC1
GAACCCC1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA13
GGAA1
AACCC1

Release history

Release3.833.843.853.86
Date2024-04-242024-05-222024-06-192024-07-17
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Fab BL3-6 binding hairpin with tSW (13)
  • Other HL (1)
  • (1)
    • Basepair signature
    cWW-tSW-F
    Heat map statistics
    Min 0.04 | Avg 0.21 | Max 0.93
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.5653 s