HL_4V5C_179
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCGCGAAGACAGCCAGUCGAGUGG
- Length
- 24 nucleotides
- Bulged bases
- 4V5C|1|DA|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5C_179 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.31
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V5C|1|DA|C|1040
4V5C|1|DA|C|1041
4V5C|1|DA|G|1042
4V5C|1|DA|C|1043
4V5C|1|DA|G|1044
4V5C|1|DA|A|1045
4V5C|1|DA|A|1046
4V5C|1|DA|G|1047
4V5C|1|DA|A|1048
4V5C|1|DA|C|1049
4V5C|1|DA|A|1050
4V5C|1|DA|G|1051
4V5C|1|DA|C|1052
4V5C|1|DA|C|1053
4V5C|1|DA|A|1106
4V5C|1|DA|G|1107
4V5C|1|DA|U|1108
4V5C|1|DA|C|1109
4V5C|1|DA|G|1110
4V5C|1|DA|A|1111
4V5C|1|DA|G|1112
4V5C|1|DA|U|1113
4V5C|1|DA|G|1114
4V5C|1|DA|G|1115
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain DH
- 50S RIBOSOMAL PROTEIN L6
- Chain DZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: