HL_4V5C_188

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAGCCCGCAAC

Length

13 nucleotides

Bulged bases

4V5C|1|DA|C|1532, 4V5C|1|DA|G|1533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5C_188 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3196

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5C|1|DA|G|1526
4V5C|1|DA|G|1527
4V5C|1|DA|A|1528
4V5C|1|DA|A|1528|||A
4V5C|1|DA|G|1529
4V5C|1|DA|C|1530
4V5C|1|DA|C|1531
4V5C|1|DA|C|1532
4V5C|1|DA|G|1533
4V5C|1|DA|C|1543
4V5C|1|DA|A|1544
4V5C|1|DA|A|1545
4V5C|1|DA|C|1546

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains