3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UCAGUCGGUAGA
Length
12 nucleotides
Bulged bases
4V5C|1|AW|U|16, 4V5C|1|AW|C|17, 4V5C|1|AW|G|18, 4V5C|1|AW|G|19, 4V5C|1|AW|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5C_226 not in the Motif Atlas
Homologous match to HL_4WT8_234
Geometric discrepancy: 0.3498
The information below is about HL_4WT8_234
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_96927.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
3

Unit IDs

4V5C|1|AW|U|12
4V5C|1|AW|C|13
4V5C|1|AW|A|14
4V5C|1|AW|G|15
4V5C|1|AW|U|16
4V5C|1|AW|C|17
4V5C|1|AW|G|18
4V5C|1|AW|G|19
4V5C|1|AW|U|20
4V5C|1|AW|A|21
4V5C|1|AW|G|22
4V5C|1|AW|A|23

Current chains

Chain AW
E-SITE TRNA PHE

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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