HL_4V5D_013

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_013 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1696

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V5D|1|AA|C|522
4V5D|1|AA|A|523
4V5D|1|AA|G|524
4V5D|1|AA|C|525
4V5D|1|AA|C|526
4V5D|1|AA|G|527

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AX

MRNA