HL_4V5D_026

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_026 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.1479

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V5D|1|AA|G|1164
4V5D|1|AA|C|1165
4V5D|1|AA|G|1166
4V5D|1|AA|A|1168
4V5D|1|AA|A|1169
4V5D|1|AA|A|1170
4V5D|1|AA|G|1171
4V5D|1|AA|C|1172

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain CJ

30S RIBOSOMAL PROTEIN S10