HL_4V5D_042
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGUAGCGG
- Length
- 9 nucleotides
- Bulged bases
- 4V5D|1|BA|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5D_042 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.3882
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V5D|1|BA|C|87
4V5D|1|BA|G|88
4V5D|1|BA|G|89
4V5D|1|BA|U|90
4V5D|1|BA|A|92
4V5D|1|BA|G|93
4V5D|1|BA|C|94
4V5D|1|BA|G|94|||A
4V5D|1|BA|G|95
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B2
- 50S RIBOSOMAL PROTEIN L29
- Chain BX
- 50S RIBOSOMAL PROTEIN L23
- Chain BY
- 50S RIBOSOMAL PROTEIN L24
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