3D structure

PDB id
4V5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UGAAGAAG
Length
8 nucleotides
Bulged bases
4V5D|1|BA|G|2529
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5D_101 not in the Motif Atlas
Homologous match to HL_7RQB_061
Geometric discrepancy: 0.1434
The information below is about HL_7RQB_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91104.1
Basepair signature
cWW-F
Number of instances in this motif group
12

Unit IDs

4V5D|1|BA|U|2528
4V5D|1|BA|G|2529
4V5D|1|BA|A|2530
4V5D|1|BA|A|2531
4V5D|1|BA|G|2532
4V5D|1|BA|A|2533
4V5D|1|BA|A|2534
4V5D|1|BA|G|2535

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B9
50S RIBOSOMAL PROTEIN L36
Chain BH
50S RIBOSOMAL PROTEIN L6

Coloring options:


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