HL_4V5D_101

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4V5D|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_101 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1434

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V5D|1|BA|U|2528
4V5D|1|BA|G|2529
4V5D|1|BA|A|2530
4V5D|1|BA|A|2531
4V5D|1|BA|G|2532
4V5D|1|BA|A|2533
4V5D|1|BA|A|2534
4V5D|1|BA|G|2535

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6