HL_4V5D_138

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_138 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1119

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5D|1|CA|G|1265
4V5D|1|CA|G|1266
4V5D|1|CA|C|1267
4V5D|1|CA|A|1268
4V5D|1|CA|A|1269
4V5D|1|CA|C|1270

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CS

30S RIBOSOMAL PROTEIN S19

Chain CU

30S RIBOSOMAL PROTEIN THX