HL_4V5D_149
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUCAGUCGGUAGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V5D|1|CY|C|17, 4V5D|1|CY|G|18, 4V5D|1|CY|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5D_149 not in the Motif Atlas
- Homologous match to HL_4WT8_218
- Geometric discrepancy: 0.2024
- The information below is about HL_4WT8_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5D|1|CY|C|11
4V5D|1|CY|U|12
4V5D|1|CY|C|13
4V5D|1|CY|A|14
4V5D|1|CY|G|15
4V5D|1|CY|U|16
4V5D|1|CY|C|17
4V5D|1|CY|G|18
4V5D|1|CY|G|19
4V5D|1|CY|U|20
4V5D|1|CY|A|21
4V5D|1|CY|G|22
4V5D|1|CY|A|23
4V5D|1|CY|G|24
Current chains
- Chain CY
- P AND A-SITE PHE-TRNA PHE
Nearby chains
- Chain CV
- Transfer RNA; tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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