HL_4V5D_161

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V5D|1|DA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_161 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0907

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V5D|1|DA|U|305
4V5D|1|DA|U|306
4V5D|1|DA|G|307
4V5D|1|DA|G|308
4V5D|1|DA|G|309
4V5D|1|DA|A|310
4V5D|1|DA|A|311
4V5D|1|DA|G|312

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DY

50S RIBOSOMAL PROTEIN L24