HL_4V5D_178

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4V5D|1|DA|U|958, 4V5D|1|DA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_178 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1113

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V5D|1|DA|C|955
4V5D|1|DA|G|956
4V5D|1|DA|A|957
4V5D|1|DA|U|958
4V5D|1|DA|A|959
4V5D|1|DA|A|960
4V5D|1|DA|C|961
4V5D|1|DA|G|962

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DQ

50S RIBOSOMAL PROTEIN L16