HL_4V5D_191

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V5D|1|DA|A|1614, 4V5D|1|DA|A|1616, 4V5D|1|DA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_191 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1038

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V5D|1|DA|C|1612
4V5D|1|DA|G|1613
4V5D|1|DA|A|1614
4V5D|1|DA|C|1615
4V5D|1|DA|A|1616
4V5D|1|DA|C|1617
4V5D|1|DA|A|1618
4V5D|1|DA|G|1619

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DW

50S RIBOSOMAL PROTEIN L22