HL_4V5D_201

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V5D|1|DA|A|2030, 4V5D|1|DA|A|2031, 4V5D|1|DA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_201 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0854

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V5D|1|DA|G|2027
4V5D|1|DA|U|2028
4V5D|1|DA|G|2029
4V5D|1|DA|A|2030
4V5D|1|DA|A|2031
4V5D|1|DA|G|2032
4V5D|1|DA|A|2033
4V5D|1|DA|U|2034
4V5D|1|DA|G|2035
4V5D|1|DA|C|2036

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DU

50S RIBOSOMAL PROTEIN L20