HL_4V5D_232

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

4V5D|1|BA|A|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_232 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.5508

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V5D|1|BA|C|542
4V5D|1|BA|C|543
4V5D|1|BA|A|547
4V5D|1|BA|A|548
4V5D|1|BA|G|549
4V5D|1|BA|G|551

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BN

50S RIBOSOMAL PROTEIN L13

Chain BV

50S RIBOSOMAL PROTEIN L21