HL_4V5D_235

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

4V5D|1|BA|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5D_235 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3453

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5D|1|BA|C|2142
4V5D|1|BA|C|2143
4V5D|1|BA|U|2144
4V5D|1|BA|C|2145
4V5D|1|BA|C|2146
4V5D|1|BA|G|2147
4V5D|1|BA|G|2148
4V5D|1|BA|G|2149

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain CA

Small subunit ribosomal RNA; SSU rRNA