HL_4V5D_249
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 4V5D|1|DB|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5D_249 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1078
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V5D|1|DB|U|34
4V5D|1|DB|U|35
4V5D|1|DB|C|36
4V5D|1|DB|C|37
4V5D|1|DB|C|38
4V5D|1|DB|A|39
4V5D|1|DB|U|40
4V5D|1|DB|U|41
4V5D|1|DB|C|42
4V5D|1|DB|C|43
4V5D|1|DB|G|44
4V5D|1|DB|A|45
4V5D|1|DB|A|46
4V5D|1|DB|C|47
4V5D|1|DB|A|48
Current chains
- Chain DB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
- Chain DS
- 50S RIBOSOMAL PROTEIN L18
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