HL_4V5D_256
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5D_256 not in the Motif Atlas
- Homologous match to HL_4V9I_039
- Geometric discrepancy: 0.1395
- The information below is about HL_4V9I_039
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V5D|1|CY|A|31
4V5D|1|CY|U|32
4V5D|1|CY|U|33
4V5D|1|CY|G|34
4V5D|1|CY|A|35
4V5D|1|CY|A|36
4V5D|1|CY|A|37
4V5D|1|CY|A|38
4V5D|1|CY|U|39
Current chains
- Chain CY
- P AND A-SITE PHE-TRNA PHE
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CX
- MRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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