HL_4V5E_069

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

4V5E|1|BA|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5E_069 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2686

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V5E|1|BA|G|1171
4V5E|1|BA|G|1173
4V5E|1|BA|A|1174
4V5E|1|BA|U|1175
4V5E|1|BA|G|1176
4V5E|1|BA|A|1177
4V5E|1|BA|C|1178

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains