HL_4V5E_077

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAAGCCCGCAAC

Length

13 nucleotides

Bulged bases

4V5E|1|BA|C|1532, 4V5E|1|BA|G|1533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5E_077 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3595

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

4V5E|1|BA|G|1526
4V5E|1|BA|G|1527
4V5E|1|BA|A|1528
4V5E|1|BA|A|1528|||A
4V5E|1|BA|G|1529
4V5E|1|BA|C|1530
4V5E|1|BA|C|1531
4V5E|1|BA|C|1532
4V5E|1|BA|G|1533
4V5E|1|BA|C|1543
4V5E|1|BA|A|1544
4V5E|1|BA|A|1545
4V5E|1|BA|C|1546

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17