HL_4V5E_168

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V5E|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5E_168 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2569

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V5E|1|DA|C|641
4V5E|1|DA|G|642
4V5E|1|DA|A|643
4V5E|1|DA|A|644
4V5E|1|DA|C|645
4V5E|1|DA|A|646
4V5E|1|DA|G|647

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DP

50S RIBOSOMAL PROTEIN L15